mairomaster , 05-17-2016, 10:45 AM
Hmm I don't know why is that. Your setup seems right to me. What version of Altium are you using? Just to be sure, is the same happening if you completely overlap the components, including the pads? Do you have 3D models in your components? That is not completely relevant in this case, but keep in mind that if you have 3D models, altium measures the minimum distance between them. If you don't have 3D models, Altium should be considering the selection rectangle of the component I believe.
As I said, I don't have such problem with the manual DRC, just with the online one.