If drill is shifted, you do not need to care - they can adjust this in the PCB manufacturing company. If you still would like to correct the position, then usually you have couple of options where you would like to place 0,0 of the drilling output. Go to your job file -> Fabrication Outputs -> NC Drill Files, then right click -> Configure:
- Reference to absolute origin
-
Reference to relative origin (this is probably what you would like to select)